@martinayotte Thanks for suggestions. Unfortunately the only one usb port is used by external usb-sensor, and there is no internet access in the field. Probably, I can use secondary usb-port via 2.54 pins, but it requires a lot of hardware modification (include reroute on-the-top board and redesign 3D case).
I'v tried to modify build scripts, and made some hardcode hacks to make an additional partition (first, FAT). At this point, I have to configure u-boot somehow, to boot from second partition, and still looking for variables/script to be modified for it.