Armbian is designed to have one kernel installed at a time only. When using armbian-config for switching it checks apt repo for available packages for the board and gives the user the choice to install one of them.
However it is possible to use the Armbian Build Framework to create a set of custom packages that can simply be installed via dpkg. Within creating those you have the option to adjust the kernel config.
So in your situation you go through that building process three times to create three package sets with the different frequencies enabled.
Install one set, reboot and test, install the next set, reboot and test again and so on.